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Implementation of a project-based learning model in the higher education institution allots a task of coordination of the subject-oriented and project-oriented management of the educational process. The purpose of the paper is the development of the aspects of activity management of the institution of higher education to attract students to scientific and innovative activities within the educational process and the performance of qualifying works. It has been proposed to create the Center of innovation development at the University. The Center will provide the functioning of the information and reference system. The system includes the following modules: registration of tasks; formation of project groups; organization of the distribution of time and material resources during the implementation of a specific project and between projects; an electronic directory of implemented projects and a database of documents for the verification of project results. This model of work allows the creation of associations, including the transboundary ones, between different universities depending on the scope of tasks and the level of opportunities in the implementation of solutions. The main approach in the activity management is to use the tools of lean methods of project development. A methodology for activity analysis and generating a set of organizational and management documents’ templates, which need to be brought into being to ensure the functioning of the proposed system within the framework of the University's activities, has been developed.
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